data_H6Z
#

_chem_comp.id                                   H6Z
_chem_comp.name                                 "2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C9 H19 O11 P"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;[(2~{S})-1,1-bis(oxidanyl)propan-2-yl]
[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate;
2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-alpha-D-glucose;
2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-D-glucose;
2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-glucose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-11-19
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.214
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H6Z
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6I7W
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  H6Z  
;[(2~{S})-1,1-bis(oxidanyl)propan-2-yl]
[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
;
  PDB  ?  
2  H6Z  "2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-alpha-D-glucose"  PDB  ?  
3  H6Z  "2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-D-glucose"  PDB  ?  
4  H6Z  "2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-glucose"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H6Z  P1   P1   P  0  1  N  N  N  -22.055   -7.118  -25.444  -1.462   0.120   0.593  P1   H6Z   1  
H6Z  C6   C8   C  0  1  N  N  N  -24.379  -12.844  -28.721   5.444  -0.297   0.388  C6   H6Z   2  
H6Z  C3   C5   C  0  1  N  N  S  -24.601   -9.392  -26.859   1.959   1.086  -0.484  C3   H6Z   3  
H6Z  C4   C6   C  0  1  N  N  S  -24.930  -10.436  -27.950   3.399   1.097   0.038  C4   H6Z   4  
H6Z  O2   O6   O  0  1  N  N  N  -22.868   -8.489  -25.463  -0.145  -0.095  -0.307  O2   H6Z   5  
H6Z  C2A  C2   C  0  1  N  N  S  -23.743   -5.116  -24.889  -4.082   0.375   0.135  C2A  H6Z   6  
H6Z  C2   C4   C  0  1  N  N  R  -23.082   -9.228  -26.661   1.180  -0.028   0.223  C2   H6Z   7  
H6Z  O1A  O1   O  0  1  N  N  N  -25.577   -5.104  -23.280  -6.293  -0.572   0.371  O1A  H6Z   8  
H6Z  C1A  C1   C  0  1  N  N  N  -25.236   -5.391  -24.640  -4.977  -0.841  -0.116  C1A  H6Z   9  
H6Z  O2A  O2   O  0  1  N  N  N  -25.561   -6.752  -24.921  -5.033  -1.111  -1.518  O2A  H6Z  10  
H6Z  C3A  C3   C  0  1  N  N  N  -23.557   -3.689  -25.410  -4.657   1.590  -0.596  C3A  H6Z  11  
H6Z  O3A  O3   O  0  1  N  N  N  -21.653   -6.949  -24.033  -1.571  -1.066   1.677  O3A  H6Z  12  
H6Z  O4A  O4   O  0  1  N  N  N  -21.015   -7.112  -26.491  -1.374   1.421   1.292  O4A  H6Z  13  
H6Z  O5A  O5   O  0  1  N  N  N  -23.193   -6.036  -25.854  -2.766   0.105  -0.352  O5A  H6Z  14  
H6Z  O3   O7   O  0  1  N  N  N  -25.170   -8.110  -27.213   1.342   2.346  -0.216  O3   H6Z  15  
H6Z  O4   O8   O  0  1  N  N  N  -26.336  -10.670  -27.944   4.155   2.084  -0.668  O4   H6Z  16  
H6Z  C5   C7   C  0  1  N  N  R  -24.180  -11.773  -27.635   4.026  -0.282  -0.185  C5   H6Z  17  
H6Z  O6   O9   O  0  1  N  N  N  -23.863  -12.363  -29.967   6.070  -1.544   0.078  O6   H6Z  18  
H6Z  O5   OX1  O  0  1  N  N  N  -22.757  -11.522  -27.531   3.236  -1.275   0.473  O5   H6Z  19  
H6Z  C1   C9   C  0  1  N  N  S  -22.352  -10.589  -26.505   1.892  -1.363  -0.006  C1   H6Z  20  
H6Z  O1   OX2  O  0  1  N  Y  N  -22.636  -11.153  -25.224   1.904  -1.663  -1.404  O1   H6Z  21  
H6Z  H61  H1   H  0  1  N  N  N  -25.452  -13.062  -28.828   6.021   0.518  -0.050  H61  H6Z  22  
H6Z  H62  H2   H  0  1  N  N  N  -23.845  -13.762  -28.433   5.401  -0.171   1.469  H62  H6Z  23  
H6Z  H3   H3   H  0  1  N  N  N  -25.037   -9.738  -25.910   1.962   0.902  -1.559  H3   H6Z  24  
H6Z  H4   H4   H  0  1  N  N  N  -24.597  -10.058  -28.928   3.399   1.330   1.102  H4   H6Z  25  
H6Z  H5A  H5   H  0  1  N  N  N  -23.206   -5.213  -23.934  -4.039   0.580   1.204  H5A  H6Z  26  
H6Z  H2   H6   H  0  1  N  N  N  -22.662   -8.695  -27.527   1.135   0.182   1.292  H2   H6Z  27  
H6Z  H7   H7   H  0  1  N  N  N  -25.364   -4.199  -23.084  -6.916  -1.301   0.245  H7   H6Z  28  
H6Z  H8   H8   H  0  1  N  N  N  -26.486   -6.897  -24.760  -5.388  -0.382  -2.045  H8   H6Z  29  
H6Z  H9   H9   H  0  1  N  N  N  -23.972   -2.976  -24.683  -4.700   1.384  -1.665  H9   H6Z  30  
H6Z  H10  H10  H  0  1  N  N  N  -22.485   -3.487  -25.550  -5.661   1.795  -0.225  H10  H6Z  31  
H6Z  H11  H11  H  0  1  N  N  N  -24.080   -3.579  -26.372  -4.020   2.456  -0.417  H11  H6Z  32  
H6Z  H12  H12  H  0  1  N  N  N  -20.709   -6.852  -23.982  -1.632  -1.949   1.288  H12  H6Z  33  
H6Z  HO3  H13  H  0  1  N  Y  N  -24.964   -7.474  -26.538   1.784   3.098  -0.634  HO3  H6Z  34  
H6Z  HO4  H14  H  0  1  N  Y  N  -26.793   -9.859  -28.135   5.080   2.143  -0.391  HO4  H6Z  35  
H6Z  H5   H15  H  0  1  N  N  N  -24.560  -12.166  -26.680   4.062  -0.496  -1.253  H5   H6Z  36  
H6Z  HO6  H16  H  0  1  N  Y  N  -23.986  -13.024  -30.638   6.974  -1.623   0.411  HO6  H6Z  37  
H6Z  H1   H17  H  0  1  N  N  N  -21.271  -10.403  -26.591   1.366  -2.153   0.530  H1   H6Z  38  
H6Z  HO1  H18  H  0  1  N  Y  N  -22.372  -10.544  -24.544   2.340  -2.497  -1.623  HO1  H6Z  39  
H6Z  H19  H19  H  0  1  N  N  N  -25.815   -4.734  -25.305  -4.567  -1.707   0.405  H19  H6Z  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H6Z  O6   C6   SING  N  N   1  
H6Z  C6   C5   SING  N  N   2  
H6Z  C4   O4   SING  N  N   3  
H6Z  C4   C5   SING  N  N   4  
H6Z  C4   C3   SING  N  N   5  
H6Z  C5   O5   SING  N  N   6  
H6Z  O5   C1   SING  N  N   7  
H6Z  O3   C3   SING  N  N   8  
H6Z  C3   C2   SING  N  N   9  
H6Z  C2   C1   SING  N  N  10  
H6Z  C2   O2   SING  N  N  11  
H6Z  C1   O1   SING  N  N  12  
H6Z  O4A  P1   DOUB  N  N  13  
H6Z  O5A  P1   SING  N  N  14  
H6Z  O5A  C2A  SING  N  N  15  
H6Z  O2   P1   SING  N  N  16  
H6Z  P1   O3A  SING  N  N  17  
H6Z  C3A  C2A  SING  N  N  18  
H6Z  O2A  C1A  SING  N  N  19  
H6Z  C2A  C1A  SING  N  N  20  
H6Z  C1A  O1A  SING  N  N  21  
H6Z  C6   H61  SING  N  N  22  
H6Z  C6   H62  SING  N  N  23  
H6Z  C3   H3   SING  N  N  24  
H6Z  C4   H4   SING  N  N  25  
H6Z  C2A  H5A  SING  N  N  26  
H6Z  C2   H2   SING  N  N  27  
H6Z  O1A  H7   SING  N  N  28  
H6Z  O2A  H8   SING  N  N  29  
H6Z  C3A  H9   SING  N  N  30  
H6Z  C3A  H10  SING  N  N  31  
H6Z  C3A  H11  SING  N  N  32  
H6Z  O3A  H12  SING  N  N  33  
H6Z  O3   HO3  SING  N  N  34  
H6Z  O4   HO4  SING  N  N  35  
H6Z  C5   H5   SING  N  N  36  
H6Z  O6   HO6  SING  N  N  37  
H6Z  C1   H1   SING  N  N  38  
H6Z  O1   HO1  SING  N  N  39  
H6Z  C1A  H19  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H6Z  InChI             InChI                 1.03   "InChI=1S/C9H19O11P/c1-3(8(13)14)19-21(16,17)20-7-6(12)5(11)4(2-10)18-9(7)15/h3-15H,2H2,1H3,(H,16,17)/t3-,4+,5+,6-,7+,9-/m0/s1"  
H6Z  InChIKey          InChI                 1.03   SILWFZFNYLTARD-MRXKBSKTSA-N  
H6Z  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](O[P](O)(=O)O[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O)C(O)O"  
H6Z  SMILES            CACTVS                3.385  "C[CH](O[P](O)(=O)O[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O)C(O)O"  
H6Z  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](C(O)O)OP(=O)(O)O[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O"  
H6Z  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C(O)O)OP(=O)(O)OC1C(C(C(OC1O)CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          H6Z
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       
;[(2~{S})-1,1-bis(oxidanyl)propan-2-yl]
[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
;

#
_pdbx_chem_comp_related.comp_id            H6Z
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  H6Z  C2   GLC  C2   "Carbohydrate core"  
 2  H6Z  C3   GLC  C3   "Carbohydrate core"  
 3  H6Z  C4   GLC  C4   "Carbohydrate core"  
 4  H6Z  C5   GLC  C5   "Carbohydrate core"  
 5  H6Z  C6   GLC  C6   "Carbohydrate core"  
 6  H6Z  C1   GLC  C1   "Carbohydrate core"  
 7  H6Z  O2   GLC  O2   "Carbohydrate core"  
 8  H6Z  O3   GLC  O3   "Carbohydrate core"  
 9  H6Z  O4   GLC  O4   "Carbohydrate core"  
10  H6Z  O6   GLC  O6   "Carbohydrate core"  
11  H6Z  O5   GLC  O5   "Carbohydrate core"  
12  H6Z  O1   GLC  O1   "Carbohydrate core"  
13  H6Z  H61  GLC  H61  "Carbohydrate core"  
14  H6Z  HO3  GLC  HO3  "Carbohydrate core"  
15  H6Z  HO4  GLC  HO4  "Carbohydrate core"  
16  H6Z  H5   GLC  H5   "Carbohydrate core"  
17  H6Z  HO6  GLC  HO6  "Carbohydrate core"  
18  H6Z  H1   GLC  H1   "Carbohydrate core"  
19  H6Z  HO1  GLC  HO1  "Carbohydrate core"  
20  H6Z  H62  GLC  H62  "Carbohydrate core"  
21  H6Z  H3   GLC  H3   "Carbohydrate core"  
22  H6Z  H4   GLC  H4   "Carbohydrate core"  
23  H6Z  H2   GLC  H2   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
H6Z  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
H6Z  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
H6Z  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
H6Z  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H6Z  "Create component"          2018-11-19  EBI   
H6Z  "Initial release"           2019-01-23  RCSB  
H6Z  "Other modification"        2020-07-03  RCSB  
H6Z  "Modify parent residue"     2020-07-17  RCSB  
H6Z  "Modify name"               2020-07-17  RCSB  
H6Z  "Modify synonyms"           2020-07-17  RCSB  
H6Z  "Modify internal type"      2020-07-17  RCSB  
H6Z  "Modify linking type"       2020-07-17  RCSB  
H6Z  "Modify atom id"            2020-07-17  RCSB  
H6Z  "Modify component atom id"  2020-07-17  RCSB  
H6Z  "Modify leaving atom flag"  2020-07-17  RCSB  
##
